IHC Expression Analysis — ihcstats • ClinicoPathDescriptives

IHC Expression Analysis

Usage

ihcstats(
  data,
  markers,
  computeHScore = TRUE,
  clusterMethod = "hierarchical",
  distanceMetric = "gower",
  nClusters = 3,
  showDendrogram = TRUE,
  showHeatmap = TRUE,
  showScoreDist = TRUE
)

Arguments

data: The data as a data frame.
markers: IHC marker variables with categorical expression scores
computeHScore: .
clusterMethod: .
distanceMetric: .
nClusters: .
showDendrogram: .
showHeatmap: .
showScoreDist: .

Value

A results object containing:

`results$todo`					a html
`results$hscoreTable`					a table
`results$clusterSummary`					a table
`results$clusterPlot`					an image
`results$heatmapPlot`					an image
`results$scoreDist`					an image

Tables can be converted to data frames with asDF or as.data.frame. For example:

results$hscoreTable$asDF

as.data.frame(results$hscoreTable)