Package index
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ClinicoPath-packageClinicoPath - ClinicoPath: Analysis for Clinicopathological Research
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TestROC() - Test ROC
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agepyramid() - Age Pyramid
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agepyramidClass - Age Pyramid
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agreement() - Interrater Reliability
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agreementClass - Interrater Reliability Analysis
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alluvial() - Alluvial Diagrams
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alluvialClass - Alluvial Plot
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alluvialSurvival() - Treatment Pathway Alluvial Plot
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auc_ci() - Statistical Utility Functions
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benford() - Benford Analysis
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bootstrap_ci() - Bootstrap confidence intervals for diagnostic metrics
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checkdata() - Checking data
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chisq.multcomp() - Title
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ciSingle() - Confidence interval for a mean
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classification() - Decision tree
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comparingSurvival() - Comparing Survival Outcomes
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competingsurvival() - Overall, Cause Specific, and Competing Survival
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competingsurvivalClass - Competing Survival Analysis
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consort() - CONSORT Flowchart
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consortClass - CONSORT Flowchart
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contTables() - Contingency Tables
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contTablesPaired() - Paired Samples Contingency Tables
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correlation() - Correlation
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correlationClass - Correlation Analysis
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crosstable() - Cross Tables
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crosstableClass - Cross Table
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decision() - Medical Decision
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decision2() - Decision 2 for using init
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decisionClass - Medical Decision Analysis
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decisioncalculator() - Medical Decision Calculator
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decisioncalculatorClass - Decision Calculator
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dendogram() - Dendogram
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flowchart() - Study Flowchart
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flowchartClass - Study Flowchart
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gtsummary() - Tables via gtsummary
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gtsummaryClass - Tables via gtsummary
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histopathology - histopathology
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icccoeff() - ICC coefficients
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icccoeffClass - Interclass Correlation Coefficient Also see http://www.cookbook-r.com/Statistical_analysis/Inter-rater_reliability/#ordinal-data-weighted-kappa
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ihcstats() - IHC Expression Analysis
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ihcstatsClass - IHC Expression Analysis
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jjarcdiagram() - Arc Diagram
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jjarcdiagramClass - Arc Diagram
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jjbarstats() - Bar Charts
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jjbarstatsClass - Bar Charts
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jjbetweenstats() - Box-Violin Plots to Compare Between Groups
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jjbetweenstatsClass - Violin Plots to Compare Between Groups
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jjcorrmat() - Correlation Matrix
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jjcorrmatClass - Correlation Matrix
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jjdotplotstats() - Dot Chart
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jjdotplotstatsClass - Dot Chart
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jjhistostats() - Histogram
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jjhistostatsClass - Histogram
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jjpiestats() - Pie Charts
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jjpiestatsClass - Pie Charts
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jjridgestats() - Ridgeline Plot
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jjridgestatsClass - Enhanced Ridgeline Plot
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jjscatterstats() - Scatter Plot
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jjscatterstatsClass - Scatter Plot
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jjstreamgraph() - StreamGraphs
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jjstreamgraphClass - StreamGraphs
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jjtreemap() - Treemap
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jjtreemapClass - Treemap
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jjwithinstats() - Box-Violin Plots to Compare Within Groups
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jviolin() - Violin Plot
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jviolinClass - Violin Plot
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kappaSizeCI() - Confidence Interval Approach for the Number of Subjects Required
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kappaSizeCIClass - Confidence Interval Approach for the Number of Subjects Required
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kappaSizeFixedN() - Lowest Expected Value for a fixed sample size
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kappaSizeFixedNClass - Lowest Expected Value for a fixed sample size
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kappaSizePower() - Power Approach for the Number of Subjects Required
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kappaSizePowerClass - Power Approach for the Number of Subjects Required
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lassocox() - Lasso-Cox Regression
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lassocoxClass - Lasso-Cox Regression
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linechart() - Line Chart
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lollipop() - Lollipop Chart
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multisurvival() - Multivariable Survival Analysis
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multisurvivalClass - Multivariable Survival Analysis
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nogoldstandard() - Analysis Without Gold Standard
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nogoldstandardClass - Analysis Without Gold Standard
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nomogram() - Nomogram
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oddsratio() - Odds Ratio Table and Plot
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oddsratioClass - Odds Ratio Table and Plot
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oneSurvival() - One Survival Outcome
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pairchi2() - Pairwise Chi-Square Test
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pairchi2Class - Title
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parallelplot() - Parallel Plot
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ppv() - Positive Predictive Value
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print(<DeLong>) - Print Method for DeLong
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print(<sensSpecTable>) - Sensitivity and Specificity Table
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reportcat() - Summary of Categorical Variables
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reportcatClass - Summary of Categorical Variables
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retracted() - Find Retracted Papers from DOI
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retractedClass - Find Retracted Papers from DOI
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roc() - ROC
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rocClass - ROC Analysis
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singlearm() - Single Arm Survival
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singlearmClass - Single Arm Survival
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statsplot2() - Graphs and Plots
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statsplot2Class - Plots and Graphs Based on Variable Types
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summarydata() - Summary of Continuous Variables
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summarydataClass - Summary of Continuous Variables
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survival() - Survival Analysis
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survivalClass - Survival Analysis
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survivalcont() - Survival Analysis for Continuous Variable
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survivalcontClass - Survival Analysis for Continuous Explanatory Variable
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swimmerplot() - Swimmer Plot
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swimmerplotClass - Swimmer Plot
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tableone() - Table One
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tableoneClass - Table One
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tidyplots() - Tidy Plots
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tidyplotsClass - Tidy Plots
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timeinterval() - Time Interval Calculator
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timeintervalClass - Time Interval Calculator
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timeroc() - Time-Dependent ROC Analysis
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toolssummary() - Tools for data summary
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toolssummaryClass - Tools for data summary
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tree() - Decision Tree
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treeClass - Decision Tree
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tumor_response_examples - Example Tumor Response Datasets
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vartree() - Variable Tree
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vartreeClass - Variable Tree
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venn() - Venn Diagram
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vennClass - Venn Diagram
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waffle() - Waffle Charts
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waffleClass - Waffle Charts
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waterfall() - Treatment Response Analysis
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waterfallClass - Treatment Response Analysis